in press

Chabas H., Nicot A., Meaden S., Westra E., Tremblay D., Pradier L., Lion S., Moineau S. & Gandon S. (in press) Variability in the durability of CRISPR-Cas immunity. Philosophical Transactions B. [bib]


Govaert L. & 13 others (2019) Eco-evolutionary feedbacks -- theoretical models and perspectives. Functional Ecology. 33(1): 13-30. [bib] [pdf] [doi]


Ansaldi M., Debarbieux L., Gandon S., Petit M., Tavares P. & Boulanger P. (2018) "French phage network" -- third meeting report. Viruses. 10(3): 123. [bib] [doi]

Böhme U. & 16 others (2018) Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals. Genome Research. 28(4): 547-560. [bib] [doi]

Chabas H., Lion S., Nicot A., Meaden S., van Houte S., Moineau S., Wahl L. M., Westra E. R. & Gandon S. (2018) Evolutionary emergence of infectious diseases in heterogeneous host populations. PLoS Biology. 16(9): e2006738. [bib] [pdf] [doi]

Gandon S. (2018) Evolution and manipulation of vector host choice. The American Naturalist. [bib] [doi]

Landsberger M., Gandon S., Meaden S., Rollie C., Chevallereau A., Chabas H., Buckling A., Westra E. R. & van Houte S. (2018) Anti-crispr phages cooperate to overcome crispr-cas immunity. Cell. 174(4): 908-916. [bib] [doi]

Lion S. (2018) Theoretical approaches in evolutionary ecology: environmental feedback as a unifying perspective. The American Naturalist. 191(1): 21-44. [bib] [pdf] [doi]

Lion S. (2018) Class structure, demography and selection: reproductive-value weighting in nonequilibrium, polymorphic populations. The American Naturalist. 191(5): 620-637. [bib] [pdf] [doi] [som]

Lion S. (2018) From the Price equation to the selection gradient in class-structured populations: a quasi-equilibrium route. Journal of Theoretical Biology. 447C: 178-189. [bib] [pdf] [doi]

Lion S. & Metz J. A. J. (2018) Beyond R0 maximisation: on pathogen evolution and environmental dimensions. Trends in Ecology and Evolution. 33: 75-90. [bib] [pdf] [doi]

Parsons T. L., Lambert A., Day T. & Gandon S. (2018) Pathogen evolution in finite populations: slow and steady spreads the best. Journal of The Royal Society Interface. 15(147): 135. [bib] [doi]

Pigeault R., Caudron Q., Nicot A., Rivero A. & Gandon S. (2018) Timing malaria transmission with mosquito fluctuations. Evolution Letters. 378-389. [bib] [doi]

Rivero A. & Gandon S. (2018) Evolutionary ecology of avian malaria: past to present. Trends in Parasitology. 34: 712-726. [bib] [doi]


Bourret V., Lyall J., Frost S. D. W., Teillaud A., Smith C. A., Leclaire S., Fu J., Gandon S., Guérin J. & Tiley L. S. (2017) Adaptation of avian influenza virus to a swine host. Virus evolution. 3(1): vex007. [bib] [doi]

Gandon S. & Lion S. (2017) Ebola evolution during the 2013-2016 outbreak. Peer Community in Evolutionary Biology. 100019. [bib] [doi]

Gandon S. & Mirrahimi S. (2017) A Hamilton–Jacobi method to describe the evolutionary equilibria in heterogeneous environments and with non-vanishing effects of mutations. Comptes Rendus Mathematique. 355(2): 155-160. [bib] [doi]

Torres-Barceló C., Kaltz O., Froissart R., Gandon S., Ginet N. & Ansaldi M. (2017) "French phage network" -- second meeting report. Viruses. 9(4): 87. [bib] [doi]


Gandon S. (2016) Why be temperate: lessons from bacteriophage lambda. Trends in Microbiology. 24(5): 356-365. [bib] [pdf] [doi]

Gandon S., Day T., Metcalf C. J. E. & Grenfell B. (2016) Forecasting epidemiological and evolutionary dynamics of infectious diseases. Trends in Ecology and Evolution. 31: 776-788. [bib] [pdf] [doi]

Lion S. (2016) Moment equations in spatial evolutionary ecology. Journal of theoretical biology. 405: 46-57. [bib] [pdf] [doi]

Lion S. & Gandon S. (2016) Spatial evolutionary epidemiology of spreading epidemics. Proceedings of the Royal Society B. 283: 20161170. [bib] [pdf] [doi] [som]

Pigeault R., Garnier R., Rivero A. & Gandon S. (2016) Evolution of transgenerational immunity in invertebrates. Proceedings of the Royal Society London B. [bib] [doi]

van Houte S. & 10 others (2016) The diversity-generating benefits of a prokaryotic adaptive immune system. Nature. 532(7599): 385-388. [bib] [pdf] [doi]


Abbate J. L., Kada S. & Lion S. (2015) Beyond mortality: Sterility as a neglected component of parasite virulence. PLoS Pathogens. 11(12): e1005229. [bib] [pdf] [doi]

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