Fabre F., Burie J., Ducrot A., Lion S., Richard Q. & Djidjou-Demasse R. (2022) An epi-evolutionary model for predicting the adaptation of spore-producing pathogens to quantitative resistance in heterogeneous environments. Evolutionary applications. 15(1): 95-110. [doi]


Bruce J. B., Lion S., Buckling A., Westra E. & Gandon S. (2021) Regulation of prophage induction and lysogenization by phage communication systems. Current Biology. 31: 1-6. [pdf] [doi]


Chevallereau A., Rollie C., Watson B., Chyou T., Fradet O., McLeod I., Fineran P., Brown C., Gandon S. & Westra E. R. (2020) Targeting of temperate phages drives loss of type I crispr-cas systems. Nature. 578: 149-153. [doi]


Chabas H., Nicot A., Meaden S., Westra E., Tremblay D., Pradier L., Lion S., Moineau S. & Gandon S. (2019) Variability in the durability of CRISPR-Cas immunity. Philosophical Transactions B. 374: 20180097. [doi]


Chabas H., Lion S., Nicot A., Meaden S., van Houte S., Moineau S., Wahl L. M., Westra E. R. & Gandon S. (2018) Evolutionary emergence of infectious diseases in heterogeneous host populations. PLoS Biology. 16(9): e2006738. [pdf] [doi]

Lion S. & Metz J. A. J. (2018) Beyond R0 maximisation: on pathogen evolution and environmental dimensions. Trends in Ecology and Evolution. 33: 75-90. [pdf] [doi]


Gandon S. (2016) Why be temperate: lessons from bacteriophage lambda. Trends in Microbiology. 24(5): 356-365. [pdf] [doi]

van Houte S. & 10 others (2016) The diversity-generating benefits of a prokaryotic adaptive immune system. Nature. 532(7599): 385-388. [pdf] [doi]


Lion S., Jansen V. A. A. & Day T. (2011) Evolution in structured populations: beyond the kin/group debate. Trends in Ecology and Evolution. 26(4): 193-201. [pdf] [doi] [som]

Vale P. F., Wilson A. J., Best A., Boots M. & Little T. (2011) Epidemiological, evolutionary, and coevolutionary implications of context-dependent parasitIsm. The American Naturalist. 177: 510:521. [pdf]


Gandon S. & Nuismer S. (2009) Interactions between drift, gene flow, and selection mosaics drive parasite local adaptation. The American Naturalist. 173: 212-224. [pdf]


Gandon S., Buckling A., Decaestecker E. & Day T. (2008) Host-parasite coevolution and patterns of adaptation across time and space. Journal of evolutionary Biology. 21: 1861-1866. [pdf]

Nuismer S. L. & Gandon S. (2008) Moving beyond common garden and transplant designs: insight into the causes of local adaptation in species interactions. The American Naturalist. 171: 658-668. [pdf]


Poullain V., Gandon S., Brockhurst M., Buckling A. & Hochberg M. (2007) The evolution of specificity in evolving and coevolving antagonistic interactions between bacteria and phage. Evolution. 61: 1-11. [pdf]


Day T. & Gandon S. (2006) Insights from Price’s equation into evolutionary epidemiology. In: Disease evolution: models, concepts and data analyses. (Feng, Z. Dieckmann U.; Levin, S., eds.) American Mathematical Society, p. 23-43. [pdf]


Morgan A. D., Gandon S. & Buckling A. (2005) The effect of migration on local adaptation in a coevolving host-parasite system. Nature. 437: 253-256. [pdf]


Gandon S. (2002) Local adaptation and the geometry of host-parasite coevolution. Ecology Letters. 5: 246-256. [pdf]

Gandon S., Agnew P. & and Michalakis Y. (2002) Coevolution between parasite virulence and host life-history traits. The American Naturalist. 160: 374-388. [pdf]

Gandon S., van Baalen M. & Jansen V. A. A. (2002) The evolution of parasite virulence, superinfection, and host resistance. The American Naturalist. 159: 658-669. [pdf]

Gandon S. & Michalakis Y. (2002) Local adaptation, evolutionary potential and host-parasite coevolution: interactions between migration, mutation, population size and generation time. Journal of evolutionary Biology. 15: 451-462. [pdf]


Gandon S., Ebert D., Olivieri I. & Michalakis Y. (1998) Differential adaptation in spatially heterogeneous environments and host-parasite coevolution. In: Genetic Structure and Local adaptation in natural insect populations. (Mopper, S.; Strauss, S., eds.) Chapman and Hall, New York, NJ, USA, p. 325-340.

Gandon S. & Van Zandt P. A. (1998) Local adaptation and host-parasite interactions. Trends in Ecology and Evolution. 13: 214-216. [pdf]


Gandon S., Capowiez Y., Dubois Y., Michalakis Y. & Olivieri I. (1996) Local adaptation and gene-for-gene coevolution in a metapopulation model. Proceedings of the Royal Society of London B: Biological Sciences. 263: 1003-1009. [pdf]

Gandon S., Ebert D. & Michalakis Y. (1996) Metapopulations and local adaptation in host-parasite interactions. Trends in Ecology and Evolution. 11: 431.

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