2022

Fabre F., Burie J., Ducrot A., Lion S., Richard Q. & Djidjou-Demasse R. (2022) An epi-evolutionary model for predicting the adaptation of spore-producing pathogens to quantitative resistance in heterogeneous environments. Evolutionary applications. 15(1): 95-110. [bib] [doi]

Gandon S. & Lion S. (2022) Targeted vaccination and the speed of SARS-CoV-2 adaptation. PNAS. 119(3): e2110666119. [bib] [doi]

Lion S., Boots M. & Sasaki A. (2022) Multi-morph eco-evolutionary dynamics in structured populations. American naturalist. 200(3): 345-372. [bib] [pdf] [doi] [som]

Lion S. & Gandon S. (2022) Evolution of class-structured populations in fluctuating environments. Evolution. [bib] [pdf] [doi] [som]

Sasaki A., Lion S. & Boots M. (2022) Antigenic escape selects for the evolution of higher pathogen transmission and virulence. Nature Ecology & Evolution. 6: 51-62. [bib] [doi]

2021

Bruce J. B., Lion S., Buckling A., Westra E. & Gandon S. (2021) Regulation of prophage induction and lysogenization by phage communication systems. Current Biology. 31: 1-6. [bib] [pdf] [doi]

Walter A. & Lion S. (2021) Epidemiological and evolutionary consequences of periodicity in treatment coverage. Proceedings of the Royal Society B. 288: 20203007. [bib] [pdf] [som]

2020

Carmona P. & Gandon S. (2020) Winter is coming: pathogen emergence in seasonal environments. PLoS Computational Biology. 16(7): e1007954. [bib] [doi]

Chevallereau A., Rollie C., Watson B., Chyou T., Fradet O., McLeod I., Fineran P., Brown C., Gandon S. & Westra E. R. (2020) Targeting of temperate phages drives loss of type I crispr-cas systems. Nature. 578: 149-153. [bib] [doi]

Chevallereau A., Meaden S., Fradet O., Landsberger M., Maestri A., Biswas A., Gandon S., van Houte S. & Westra E. R. (2020) Exploitation of the cooperative behaviors of anti-crispr phages. Cell Host and Microbe. 27(2): 157-159. [bib] [doi]

Day T., Parsons T., Lambert A. & Gandon S. (2020) The Price equation and evolutionary epidemiology. Philosophical Transactions B. 375(1797): 20190357. [bib]

Day T., Gandon S., Lion S. & Otto S. (2020) On the evolutionary epidemiology of SARS-CoV-2. Current Biology. 30(15): R849-R857. [bib] [doi]

Mirrahimi S. & Gandon S. (2020) Evolution of specialization in heterogeneous environments: equilibrium between selection, mutation and migration. Genetics. 214: 479-491. [bib] [doi]

2019

Chabas H., Nicot A., Meaden S., Westra E., Tremblay D., Pradier L., Lion S., Moineau S. & Gandon S. (2019) Variability in the durability of CRISPR-Cas immunity. Philosophical Transactions B. 374: 20180097. [bib] [doi]

Cornet S., Nicot A., Rivero A. & Gandon S. (2019) Avian malaria alters the dynamics of blood feeding in culex pipiens mosquitoes. Malaria journal. 18(1): 82. [bib] [doi]

Gandon S. (2019) Evolutionary epidemiology theory of vaccination. In: Pertussis: Epidemiology, Immunology, and Evolution. (Rohani, P.; Scarpino, S. V., eds.) Oxford University Press, p. 133-143. [bib]

Gandon S., Heitzmann L. & Sebbane F. (2019) To block or not to block: the adaptive manipulation of plague transmission. Evolution letters. 3(2): 152-161. [bib] [doi]

Govaert L. & 13 others (2019) Eco-evolutionary feedbacks -- theoretical models and perspectives. Functional Ecology. 33(1): 13-30. [bib] [pdf] [doi]

Levin S., Gandon S. & West S. (2019) The social coevolution hypothesis for the origin of enzymatic cooperation. Nature Ecology and Evolution. [bib]

Westra E. R., Van Houte S., Gandon S. & Whitaker R. (2019) The ecology and evolution of microbial crispr-cas adaptive immune systems. Philosophical Transactions B. [bib] [doi]

2018

Ansaldi M., Debarbieux L., Gandon S., Petit M., Tavares P. & Boulanger P. (2018) "French phage network" -- third meeting report. Viruses. 10(3): 123. [bib] [doi]

Böhme U. & 16 others (2018) Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals. Genome Research. 28(4): 547-560. [bib] [doi]

Chabas H., Lion S., Nicot A., Meaden S., van Houte S., Moineau S., Wahl L. M., Westra E. R. & Gandon S. (2018) Evolutionary emergence of infectious diseases in heterogeneous host populations. PLoS Biology. 16(9): e2006738. [bib] [pdf] [doi]

Gandon S. (2018) Evolution and manipulation of vector host choice. The American Naturalist. [bib] [doi]

Landsberger M., Gandon S., Meaden S., Rollie C., Chevallereau A., Chabas H., Buckling A., Westra E. R. & van Houte S. (2018) Anti-crispr phages cooperate to overcome crispr-cas immunity. Cell. 174(4): 908-916. [bib] [doi]

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